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DNA sieve -- Nanoscale pores can be tiny analysis labs

Imagine being able to rapidly identify tiny biological molecules such as DNA and toxins using less than a drop of salt water in a system that can fit on a microchip. It's closer than you might believe, say a team of researchers at the National Institute of Standards and Technology (NIST), Brazil's Universidade Federal de Pernambuco, and Wright State University in Dayton, Ohio.

In a paper appearing next week in the Proceedings of the National Academy of Sciences,* the team proves for the first time that a single nanometer-scale pore in a thin membrane can be used to accurately detect and sort different-sized polymer chains (a model for biomolecules) that pass through or block the channel.

Traditionally, unknown molecules are measured and identified using mass spectrometry, a process that involves ionizing and disintegrating large numbers of a target molecule, then analyzing the masses of the resulting molecules to produce a "molecular fingerprint" for the original sample. This equipment can cover a good-sized desk. By contrast, the "single-molecule mass spectrometry" system described in the PNAS paper is a non-destructive technique that in principle can measure one molecule at a time in a space small enough to fit on a single microchip device.

The technique involves creating a lipid bilayer membrane similar to those in living cells, and "drilling" a pore in it with a protein (alpha-hemolysin) produced by the Staphyloccoccus aureus bacteria specifically to penetrate cell membranes. Charged molecules (such as single-stranded DNA) are forced one-at-a-time into the nanopore, which is only 1.5 nanometers (the diameter of a human hair is about 10,000 nanometers) at its smallest point, by an applied electric current. As the molecules pass through the channel, the current flow is reduced in proportion to the size of each individual chain, allowing its mass to be easily derived.

In this experiment, various-sized chains in solution of the u
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Contact: Michael E. Newman
michael.newman@nist.gov
301-975-3025
National Institute of Standards and Technology (NIST)
11-May-2007


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