HOME >> BIOLOGY >> NEWS
DOE JGI releases IMG 1.5 with curated archaeal genomes

WALNUT CREEK, CA--Version 1.5 of the Integrated Microbial Genomes (IMG) data management system of the U.S. Department of Energy Joint Genome Institute (DOE JGI) has been released to the public. IMG 1.5 now contains a total of 741 genomes (435 bacterial, 32 archaeal, 15 eukaryotic genomes and 259 bacterial phages) of which 602 are finished and 139 are draft genomes.

IMG 1.5 contains 62 finished and 100 draft genomes sequenced by DOE JGI, bringing this total to 162 microbial genomes generated in-house. Compared to the previous release, IMG 1.5 contains 38 new (17 finished, 21 draft) DOE JGI genomes and 21 new public microbial genomes.

Among the challenges in genomics remains the determination of the precise location of genes from DNA sequence information. DOE JGI has embarked on curating the gene models of microbial genomes culled from public sources. Towards this goal, IMG 1.5 now contains 22 archaeal genomes with curated gene models and detailed documentation of the methodology and standards employed for achieving this goal. A separate IMG Curated Archaeal Genomes data mart (http://img.jgi.doe.gov/archaeal_qa/) contains these genomes with their corresponding original genomes from the public domain, and allows the examination of gene model changes by comparing each curated gene model with the original.

IMG 1.5 extensions include the addition of IMG terms (which are curated protein products) and IMG pathways to characterize genes. Also, users are now able to enter their own product name for a gene directly through the gene details page and to propagate this annotation to selected paralogs, orthologs, and homologs of the gene. User interface extensions include such enhanced comparative analysis capabilities as gene profiles across genomes. For more details on the user interface, see What's New (http://img.jgi.doe.gov/pub/doc/release
'"/>


Contact: David Gilbert
gilbert21@llnl.gov
925-296-5643
DOE/Joint Genome Institute
27-Jun-2006


Page: 1 2

Related biology news :

1. Journal of Nuclear Medicine releases new research faster
2. DOE JGI releases enhanced Genome Data Management System IMG 2.1 marking 2-year anniversary
3. National panel led by LSU Chancellor releases report on Corps of Engineers
4. AAAS releases video and first board consensus statement on climate change
5. DOE JGI releases IMG 2.0 with all genomes refreshed from RefSeq
6. NSET releases document: EHS research needs for engineered nanoscale materials
7. DOE JGI sequences, releases genome of symbiotic tree fungus
8. DOE JGI releases experimental metagenomics data management & analysis system
9. DOE JGI releases fourth version of IMG in 2005
10. Center releases new public survey on stem cells
11. DOE JGI releases latest version of IMG

Post Your Comments:
*Name:
*Comment:
*Email:
TAG: DOE JGI releases IMG with curated archaeal genomes

(Date:10/15/2014)... , Oct. 15, 2014 Sandata Technologies, ... home and community-based care, today announced it released ... Sandata,s Santrax® Electronic Visit Verification™ Solution (EVV™)  for ... a home health company founded in 1996 and ... . The study details the ...
(Date:10/15/2014)... linked increased resistance to bacterial pneumonia in female mice ... estrogen. , Females are naturally more resistant to respiratory ... has shown that increased resistance to bacterial pneumonia in ... synthase 3 (NOS3). They also show that this enzyme ... sex hormone estrogen. , The team, lead by Professor ...
(Date:10/14/2014)... Cancer Research shows SIRT6—a protein known to ... the development of skin cancers by turning on an ... skin cells. , Previously considered protective, SIRT6 is part ... help regulate genomic stability and prevent some of the ... damage, which can lead to cancer. This study, in ...
Breaking Biology News(10 mins):Sandata Announces Case Study with Quality Care Services, Inc. 2Two-faced gene: SIRT6 prevents some cancers but promotes sun-induced skin cancer 2
(Date:10/25/2014)... October 24, 2014 Today, Nerium International, ... the winners of its “Reflect Your Youth” contest, an ... only seen a difference in their skin since using ... new outlook on life as a result of their ... as an effort by Nerium International to inspire conversations ...
(Date:10/25/2014)... , October 24, 2014 ... clinical-stage pharmaceutical company focused on the development of oral ... Nadav Kidron will present at FireRock Capital,s ... Capital,s Annual Micro-Cap Conference ,Date: Tuesday, October 28, 2014 ... New York City , ...
(Date:10/25/2014)... 2014 Research and Markets has ... Product , Research Area & by End User - ... In this report, the global epigenetics ... areas, and end users. The product segments of the ... & consumables, kits, and reagents. The subsegments of the ...
(Date:10/22/2014)... DUBLIN and BOSTON , ... ACT ), a leading global specialty pharmaceutical company, and ... been granted an exclusive option to acquire Rhythm,s wholly ... (RM-131), a peptide ghrelin agonist, for the treatment of ... Rhythm has completed a successful Phase 2 trial ...
Breaking Biology Technology:Nerium International™ Inspires Conversation About the Journey of Aging with “Reflect Your Youth” Contest 2Oramed to Present at the FireRock Annual Micro-Cap Conference 2Oramed to Present at the FireRock Annual Micro-Cap Conference 3Global Epigenetics (VLA, WBA, NBA, RTA, Rotary-Wing Aircraft) Market - Forecast to 2019 2Global Epigenetics (VLA, WBA, NBA, RTA, Rotary-Wing Aircraft) Market - Forecast to 2019 3Actavis Signs Option to Acquire Rhythm Subsidiary and its GI Development Product, Relamorelin 2Actavis Signs Option to Acquire Rhythm Subsidiary and its GI Development Product, Relamorelin 3Actavis Signs Option to Acquire Rhythm Subsidiary and its GI Development Product, Relamorelin 4Actavis Signs Option to Acquire Rhythm Subsidiary and its GI Development Product, Relamorelin 5
Cached News: