HOME >> BIOLOGY >> NEWS
Virginia Bioinformatics Institute launches microbial database

Researchers at the Virginia Bioinformatics Institute at Virginia Tech have launched a publicly-available microbial database to host a range of microbial genome sequences.

The VBI Microbial Database (VMD), which is described in a recent article published in Nucleic Acids Research (Vol.34, D379-D381), contains genome sequence and annotation data for the plant pathogens Phytophthora sojae and Phytophthora ramorum. The purpose of the database is to make widely available to researchers the recently completed genome sequences of these pathogens as well as powerful analytical tools in one integrated resource. The work described in the paper was completed by VBI researchers Sucheta Tripathy, Varun Pandey, Bing Fang, and Fidel Salas, and led by Brett Tyler, VBI professor and professor of plant pathology, physiology, and weed science at Virginia Tech.

VMD is an integrated resource that includes community annotation features, toolkits, and resources to perform complex queries of biological information. The projects researchers created a browser, which makes it easy for users to view the genome sequence data and connect to detailed annotation pages for each sequence. The community annotation interface is available for registered members to add or edit annotations.

The database will be expanded in 2006 to include genome sequences for the fungal pathogen Alternaria brassicicola and the oomycete pathogen Hyaloperonospora parasitica, both of which can infect the model plant Arabidopsis. In addition, support for proteomic and microarray data will be added, which will be linked to the functional genomic data and the genome sequences.

P. ramorum, also known as sudden oak death, is a serious oomycete pathogen that has attacked and killed tens of thousands of oak trees in California and Oregon; P. sojae, a sister pathogen of P. ramorum, causes serious damage to soybean crops. Tyler, in conjunction with collaborators at the U.S. Department of Energy (DOE)
'"/>

Contact: Susan Bland
subland@vbi.vt.edu
540-231-7912
Virginia Tech
7-Mar-2006


Page: 1 2

Related biology news :

1. Virginia Tech researchers to study poplar tree as model biomass crop
2. Fire ants are emerging nuisance for Virginians
3. Virginia Techs System X supercomputer provides super tool for simulation of cell division
4. Asian Soybean Rust found in Virginia, but not a threat to current crop
5. Virginia Tech chemists create new polymers by adding DNA base pairs
6. Pregnant drivers, football players safer thanks to a top Virginia Tech researcher
7. Virginia Tech student selected to meet Nobel Laureates
8. Virginia study urges early emphasis on science
9. Award supports Virginia Tech research to reduce vehicle emissions, create biofuel
10. Oswaldo Cruz Foundation, Virginia Bioinformatics Institute sign agreement...
11. Virginia Bioinformatics Institute to develop Tomato Metabolite Database

Post Your Comments:
*Name:
*Comment:
*Email:


(Date:2/8/2017)... Report Highlights ... The global synthetic-biology market reached nearly $3.9 billion in ... a compound annual growth rate (CAGR) of 24.0% through 2021. ... for synthetic biology. - Analyses of global market trends, with ... annual growth rates (CAGRs) through 2021. - Coverage of core ...
(Date:2/7/2017)... WARSAW, Ind. , Feb. 7, 2017 ... global leader in musculoskeletal healthcare, will present at the ... Lotte New York Palace Hotel on Wednesday, February 15, ... A live webcast of the presentation can be accessed ... for replay following the conference via Zimmer Biomet,s Investor ...
(Date:2/3/2017)... A new independent identity strategy consultancy firm ... . Designed to fill a critical niche in technical ... partners Mark Crego and Janice Kephart ... identity expertise that span federal governments, the 9/11 Commission, ... combined expertise has a common theme born from a ...
Breaking Biology News(10 mins):
(Date:2/23/2017)... ... February 23, 2017 , ... ... as insulin, cortisol, CRP, adiponectin, uric acid, and/or other biomarkers or SNPs of ... Assay from Salimetrics’ SalivaLab , the relationship between insulin and other relevant ...
(Date:2/23/2017)... UK (PRWEB) , ... February 22, 2017 , ... ... optics and photonics , have been named Fellows of the Society this year, ... technical contributions in the multidisciplinary fields of optics, photonics, and imaging as well ...
(Date:2/22/2017)... , Feb. 22, 2017 Scientists propose ... inflammation and organ damage in Gaucher and maybe other ... risks and lower costs than current therapies. ... Hospital Medical Center , which also included investigators from ... , report their data Feb. 22. The study was ...
(Date:2/22/2017)... DUBLIN , Feb 22, 2017 ... addition of the "Global Biological Crop Protection (Bio-Pesticide) Market-By Type, ... Forecasts (2016-2021)" report to their offering. ... Global Biological Crop Protection Market is ... The strong growth in biopesticide or biological crop protection ...
Breaking Biology Technology:
Cached News: